Citation: | Xiaojuan Zheng, Zhaoyang Zhou, Zhen Gong, Meijuan Hu, Ye Jin Ahn, Xiaojuan Zhang, Yan Zhao, Guoshu Gong, Jian Zhang, Jianru Zuo, Guan-Zhu Han, Sohn Kee Hoon, Jian-Min Zhou. Two plant NLR proteins confer strain-specific resistance conditioned by an effector from Pseudomonas syringae pv. actinidiae[J]. JOURNAL OF MECHANICAL ENGINEERING. doi: 10.1016/j.jgg.2022.06.006 |
Adachi, H., Sakai, T., Kourelis, J., Pai, H., Gonzalez Hernandez, J.L., Maqbool, A., Kamoun, S. (2022). Jurassic NLR:conserved and dynamic evolutionary features of the atypically ancient immune receptor ZAR1. bioRxiv 2020.10.12.333484
|
Axtell, M.J., and Staskawicz, B.J. (2003). Initiation of RPS2-specified disease resistance in Arabidopsis is coupled to the AvrRpt2-directed elimination of RIN4. Cell 112, 369-377
|
Bi, G., Su, M., Li, N., Liang, Y., Dang, S., Xu, J., Hu, M., Wang, J., Zou, M., Deng, Y., et al., (2021). The ZAR1 resistosome is a calcium-permeable channel triggering plant immune signaling. Cell 184, 3528-3541
|
Bisgrove, S.R., Simonich, M.T., Smith, N.M., Sattler, A., Innes, R.W. (1994). A disease resistance gene in Arabidopsis with specificity for two different pathogen avirulence genes. Plant Cell 6, 927-933
|
Burger, M., Willige, B.C., Chory, J. (2017). A hydrophobic anchor mechanism defines a deacetylase family that suppresses host response against YopJ effectors. Nature Commun. 8, 2201
|
Butler, M.I., Stockwell, P.A., Black, M.A., Day, R.C., Lamont, I.L., Poulter, R.T. (2013). Pseudomonas syringae pv. actinidiae from recent outbreaks of kiwifruit bacterial canker belong to different clones that originated in China. PloS One 8, e57464
|
Choi, S., Jayaraman, J., Sohn, K.H. (2018). Arabidopsis thaliana SOBER1 (SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1) suppresses plant immunity triggered by multiple bacterial acetyltransferase effectors. New Phytol. 219, 324-335
|
Choi, S., Prokchorchik, M., Lee, H., Gupta, R., Lee, Y., Chung, E.H., Cho, B., Kim, M.S., Kim, S.T., Sohn, K.H. (2021). Direct acetylation of a conserved threonine of RIN4 by the bacterial effector HopZ5 or AvrBsT activates RPM1-dependent immunity in Arabidopsis. Mol. Plant 14, 1951-1960
|
Cui, H., Tsuda, K., Parker, J.E. (2015). Effector-triggered immunity:from pathogen perception to robust defense. Annu. Rev. Plant Boil. 66, 487-511
|
Dou, D., Zhou, J.M. (2012). Phytopathogen effectors subverting host immunity:different foes, similar battleground. Cell Host Microbe, 12, 484-495
|
Duxbury, Z., Wu, C.H., Ding, P. (2021). A comparative overview of the intracellular guardians of plants and animals:NLRs in innate immunity and beyond. Annu. Rev. Plant Biol. 72, 155-184
|
Felix, G., Duran, J.D., Volko, S., and Boller, T. (1999). Plants have a sensitive perception system for the most conserved domain of bacterial flagellin. Plant J. 18, 265-276
|
Gomez-Gomez, L., Boller, T. (2000). FLS2:an LRR receptor-like kinase involved in the perception of the bacterial elicitor flagellin in Arabidopsis. Mol. Cell 5, 1003-1011
|
Gong, Z., Qi, J., Hu, M., Bi, G., Zhou, J.M., Han, G.Z. (2022). The origin and evolution of a plant resistosome. Plant Cell 34, 1600-1620
|
He, P., Shan, L., Sheen, J. (2007). The use of protoplasts to study innate immune responses. Methods Mol. Biol. 354, 1-9
|
Hoang, D.T., Chernomor, O., von Haeseler, A., Minh, B.Q., Vinh, L.S. (2018). UFBoot2:improving the ultrafast bootstrap approximation. Mol. Biol. Evol. 35, 518-522
|
Horsefield, S., Burdett, H., Zhang, X., Manik, M.K., Shi, Y., Chen, J., Qi, T., Gilley, J., Lai, J.S., Rank, M. X., et al., (2019). NAD+ cleavage activity by animal and plant TIR domains in cell death pathways. Science 365, 793-799
|
Hu, M., Qi, J., Bi, G., Zhou, J.M. (2020). Bacterial effectors induce oligomerization of immune receptor ZAR1 in vivo. Mol. Plant 13, 793-801
|
Jacob, P., Kim, N.H., Wu, F., El-Kasmi, F., Chi, Y., Walton, W.G., Furzer, O.J., Lietzan, A.D., Sunil, S., Kempthorn, K., et al., (2021). Plant "helper" immune receptors are Ca2+-permeable nonselective cation channels. Science 373, 420-425
|
Jayaraman, J., Choi, S., Prokchorchik, M., Choi, D. S., Spiandore, A., Rikkerink, E.H., Templeton, M.D., Segonzac, C., Sohn, K.H. (2017). A bacterial acetyltransferase triggers immunity in Arabidopsis thaliana independent of hypersensitive response. Sci. Rep. 7, 3557
|
Jayaraman, J., Yoon, M., Applegate, E.R., Stroud, E.A., Templeton, M.D. (2020). AvrE1 and HopR1 from Pseudomonas syringae pv. actinidiae are additively required for full virulence on kiwifruit. Mol. Plant Pathol. 21, 1467-1480
|
Jubic, L.M., Saile, S., Furzer, O.J., El Kasmi, F., Dangl, J.L. (2019). Help wanted:helper NLRs and plant immune responses. Curr. Opin. Plant Biol. 50, 82-94
|
Katoh, K., Standley, D.M. 2013. MAFFT multiple sequence alignment software version 7:improvements in performance and usability. Mol. Biol. Evol. 30, 772-780
|
Kirik, A., Mudgett, M.B. (2009). SOBER1 phospholipase activity suppresses phosphatidic acid accumulation and plant immunity in response to bacterial effector AvrBsT. Proc. Natl. Acad. Sci. USA 106, 20532-20537
|
Kourelis, J., and van der Hoorn, R. (2018). Defended to the nines:25 years of resistance gene cloning identifies nine mechanisms for R protein function. Plant Cell 30, 285-299
|
Laflamme, B., Dillon, M.M., Martel, A., Almeida, R., Desveaux, D., Guttman, D.S. (2020). The pan-genome effector-triggered immunity landscape of a host-pathogen interaction. Science 367, 763-768
|
Lapin, D., Bhandari, D.D., Parker, J.E. (2020). Origins and immunity networking functions of EDS1 family proteins. Annu. Rev. Phytopathol. 58, 253-276
|
Lewis, J.D., Abada, W., Ma, W., Guttman, D.S., Desveaux, D. (2008). The HopZ family of Pseudomonas syringae type III effectors require myristoylation for virulence and avirulence functions in Arabidopsis thaliana. J. Bacteriol. 190, 2880-2891
|
Lewis, J.D., Lee, A.H., Hassan, J.A., Wan, J., Hurley, B., Jhingree, J.R., Wang, P.W., Lo, T., Youn, J.Y., Guttman, D.S., et al., (2013). The Arabidopsis ZED1 pseudokinase is required for ZAR1-mediated immunity induced by the Pseudomonas syringae type III effector HopZ1a. Proc. Natl. Acad. Sci. USA 110, 18722-18727
|
Lewis, J.D., Lee, A., Ma, W., Zhou, H., Guttman, D.S., Desveaux, D. (2011). The YopJ superfamily in plant-associated bacteria. Mol. Plant Pathol. 12, 928-937
|
Li, L., Habring, A., Wang, K., Weigel, D. (2020). Atypical resistance protein RPW8/HR triggers oligomerization of the NLR immune receptor RPP7 and autoimmunity. Cell Host Microbe 27, 405-417. e6
|
Liu, C., Cui, D., Zhao, J., Liu, N., Wang, B., Liu, J., Xu, E., Hu, Z., Ren, D., Tang, D., et al., (2019). Two Arabidopsis receptor-like cytoplasmic kinases SZE1 and SZE2 associate with the ZAR1-ZED1 complex and are required for effector-triggered immunity. Mol. Plant 12, 967-983
|
Ma, S., Lapin, D., Liu, L., Sun, Y., Song, W., Zhang, X., Logemann, E., Yu, D., Wang, J., Jirschitzka, J., et al., (2020). Direct pathogen-induced assembly of an NLR immune receptor complex to form a holoenzyme. Science 370, eabe3069
|
Macho, A.P., Zumaquero, A., Ortiz-Martin, I., Beuzon, C.R. (2007). Competitive index in mixed infections:a sensitive and accurate assay for the genetic analysis of Pseudomonas syringae-plant interactions. Mol. Plant Pathol. 8, 437-450
|
Mackey, D., Belkhadir, Y., Alonso, J.M., Ecker, J.R., Dangl, J.L. (2003). Arabidopsis RIN4 is a target of the type III virulence effector AvrRpt2 and modulates RPS2-mediated resistance. Cell 112, 379-389
|
Mackey, D., Holt, B.F., 3rd, Wiig, A., Dangl, J.L. (2002). RIN4 interacts with Pseudomonas syringae type III effector molecules and is required for RPM1-mediated resistance in Arabidopsis. Cell 108, 743-754
|
Martel, A., Laflamme, B., Seto, D., Bastedo, D.P., Dillon, M.M., Almeida, R., Guttman, D.S., Desveaux, D. (2020). Immunodiversity of the Arabidopsis ZAR1 NLR is conveyed by receptor-like cytoplasmic kinase sensors. Front. Plant Sci. 11, 1290
|
Martin, R., Qi, T., Zhang, H., Liu, F., King, M., Toth, C., Nogales, E., Staskawicz, B.J. (2020). Structure of the activated ROQ1 resistosome directly recognizing the pathogen effector XopQ. Science 370, eabd9993
|
McCann, H.C., Rikkerink, E.H., Bertels, F., Fiers, M., Lu, A., Rees-George, J., Andersen, M. T., Gleave, A.P., Haubold, B., Wohlers, M. W., et al., (2013). Genomic analysis of the Kiwifruit pathogen Pseudomonas syringae pv. actinidiae provides insight into the origins of an emergent plant disease. PLoS Pathog. 9, e1003503
|
Nguyen, L.T., Schmidt, H.A., von Haeseler, A., Minh, B.Q. 2015. IQ-TREE:a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol. Biol. Evol. 32, 268-274
|
Pilkington, S.M., Crowhurst, R., Hilario, E., Nardozza, S., Fraser, L., Peng, Y., Gunaseelan, K., Simpson, R., Tahir, J., Deroles, S.C., et al., (2018). A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants. BMC Genomics 19, 257
|
Price, M.N., Dehal, P.S., Arkin, A.P. (2010). FastTree 2-approximately maximum-likelihood trees for large alignments. PLoS One 5, e9490
|
Reuber, T.L., Ausubel, F.M. (1996). Isolation of Arabidopsis genes that differentiate between resistance responses mediated by the RPS2 and RPM1 disease resistance genes. Plant Cell 8:241-249
|
Schultink, A., Qi, T., Bally, J., Staskawicz, B.J. (2019). Using forward genetics in Nicotiana benthamiana to uncover the immune signaling pathway mediating recognition of the Xanthomonas perforans effector XopJ4. New Phytol. 221, 1001-1009
|
Seto, D., Koulena, N., Lo, T., Menna, A., Guttman, D.S., Desveaux, D. (2017). Expanded type III effector recognition by the ZAR1 NLR protein using ZED1-related kinases. Nat. Plants 3, 17027
|
Tang, W., Sun, X., Yue, J., Tang, X., Jiao, C., Yang, Y., Niu, X., Miao, M., Zhang, D., Huang, S., et al., (2019) Chromosome-scale genome assembly of kiwifruit Actinidia eriantha with single-molecule sequencing and chromatin interaction mapping. GigaScience 8, giz027
|
Wan, L., Essuman, K., Anderson, R. G., Sasaki, Y., Monteiro, F., Chung, E.H., Nishimura, E.O., DiAntonio, A., Milbrandt, J., Dangl, J. L., et al., (2019). TIR domains of plant immune receptors are NAD+-cleaving enzymes that promote cell death. Science 365, 799-803
|
Wang, G., Roux, B., Feng, F., Guy, E., Li, L., Li, N., Zhang, X., Lautier, M., Jardinaud, M.F., Chabannes, M., et al., (2015a). The decoy substrate of a pathogen effector and a pseudokinase specify pathogen-induced modified-self recognition and immunity in plants. Cell Host Microbe 18, 285-295
|
Wang, J., Hu, M., Wang, J., Qi, J., Han, Z., Wang, G., Qi, Y., Wang, H. W., Zhou, J.M., Chai, J. (2019). Reconstitution and structure of a plant NLR resistosome conferring immunity. Science 364, eaav5870
|
Wang, Z. P., Xing, H. L., Dong, L., Zhang, H. Y., Han, C. Y., Wang, X. C., Chen, Q. J. (2015b). Egg cell-specific promoter-controlled CRISPR/Cas9 efficiently generates homozygous mutants for multiple target genes in Arabidopsis in a single generation. Genome Biol. 16, 144
|
Wei, H. L., Zhang, W., Collmer, A. (2018). Modular study of the type III effector repertoire in Pseudomonas syringae pv. tomato DC3000 reveals a matrix of effector interplay in pathogenesis. Cell Rep. 23, 1630-1638
|
Wu, H., Ma, T., Kang, M., Ai, F., Zhang, J., Dong, G., Liu, J. (2019). A high-quality Actinidia chinensis (kiwifruit) genome. Hort. Res. 6, 117
|
Zhou, H., Morgan, R. L., Guttman, D. S., Ma, W. (2009). Allelic variants of the Pseudomonas syringae type III effector HopZ1 are differentially recognized by plant resistance systems. Mol. Plant Microbe Interact. 22, 176-189
|
[1] | ZHENG Dan, PENG Xitian, ZHANG Xian, et al. Comparative Analysis on Muscle Quality of Procambarus clarkii Under Different Aquaculture Models in Hubei Province[J]. Science and Technology of Food Industry, 2023, 44(10): 91−97. (in Chinese with English abstract). doi: 10.13386/j.issn1002-0306.2022070202 |
[2] | XU Qiang, JIANG Xiao, TAN Xili, et al. Development of Apple Lycium barbarum Wine and Analysis of Volatile Components[J]. Science and Technology of Food Industry, 2023, 44(10): 151−159. (in Chinese with English abstract). doi: 10.13386/j.issn1002-0306.2022070048 |
[3] | GUAN Qinglin, ZHOU Xiaoli, QIN Zhicheng, et al. Recip Optimization and Quality Analysis of Lentinus edodes Chutney[J]. Science and Technology of Food Industry, 2023, 44(10): 185−194. (in Chinese with English abstract). doi: 10.13386/j.issn1002-0306.2022070211 |
[4] | WANG Yuli, LI Ting, FAN Yuwen, et al. Effect of Potassium Ions on the Properties and Mechanism Analysis of Tamarind Gum/Kappa-Carrageenan Composite Gel[J]. Science and Technology of Food Industry, 2023, 44(10): 78−83. (in Chinese with English abstract). doi: 10.13386/j.issn1002-0306.2022070184 |
[5] | LIU Xia, DAI Longhua, HUANG Zhen, et al. Gene Cloning and Enzymatic Properties of an Intracellular Maltogenic Amylase from Bacillus sp. B110[J]. Science and Technology of Food Industry, 2023, 44(10): 123−129. (in Chinese with English abstract). doi: 10.13386/j.issn1002-0306.2022080183 |
[6] | LIU Shuwei, SHEN Mengxia, WANG Yan, et al. Ultrasonic-Assisted Extraction Optimization of Antioxidant Products from Hyrtios erectus and Its Antioxidant Activity[J]. Science and Technology of Food Industry, 2023, 44(9): 236−243. (in Chinese with English abstract). doi: 10.13386/j.issn1002-0306.2022070373 |
[7] | ZHANG Shuo, WANG Qian, GUO Zhiding, et al. Effect of β-Glucanase on the Texture and Flavor Compounds of Highland Barley Bread[J]. Science and Technology of Food Industry, 2023, 44(10): 11−19. (in Chinese with English abstract). doi: 10.13386/j.issn1002-0306.2022110125 |
[8] | Tingting Yang, Yuzhu Hu, Junming Miao, Jing Chen, Jiagang Liu, Yongzhong Cheng, Xiang Gao. A BRD4 PROTAC nanodrug for glioma therapy via the intervention of tumor cells proliferation, apoptosis and M2 macrophages polarization[J]. JOURNAL OF MECHANICAL ENGINEERING. doi: 10.1016/j.apsb.2022.02.009 |
[9] | Jiaxing Li, Xiao Wang, Jiayu Ding, Yasheng Zhu, Wenjian Min, Wenbing Kuang, Kai Yuan, Chengliang Sun, Peng Yang. Development and clinical advancement of small molecules for ex vivo expansion of hematopoietic stem cell[J]. JOURNAL OF MECHANICAL ENGINEERING. doi: 10.1016/j.apsb.2021.12.006 |
[10] | Lichan Tu, Xinbo Cai, Yifeng Zhang, Yuru Tong, Jian Wang, Ping Su, Yun Lu, Tianyuan Hu, Yunfeng Luo, Xiaoyi Wu, Dan Li, Luqi Huang, Wei Gao. Mechanistic analysis for the origin of diverse diterpenes in Tripterygium wilfordii[J]. JOURNAL OF MECHANICAL ENGINEERING. doi: 10.1016/j.apsb.2022.02.013 |
[11] | Xiaoyang Wang, Huicong Meng, Yuxi Tang, Yashi Zhang, Yunxia He, Jinggeng Zhou, Xiangzong Meng. Phosphorylation of an ethylene response factor by MPK3/MPK6 mediates negative feedback regulation of pathogen-induced ethylene biosynthesis in Arabidopsis[J]. JOURNAL OF MECHANICAL ENGINEERING. doi: 10.1016/j.jgg.2022.04.012 |
[12] | Xiliang Du, Chiara Di Malta, Zhiyuan Fang, Taiyu Shen, Xiaodi Niu, Meng Chen, Bo Jin, Hao Yu, Lin Lei, Wenwen Gao, Yuxiang Song, Zhe Wang, Chuang Xu, Zhijun Cao, Guowen Liu, Xinwei Li. Nuciferine protects against high-fat diet-induced hepatic steatosis and insulin resistance via activating TFEB-mediated autophagy–lysosomal pathway[J]. JOURNAL OF MECHANICAL ENGINEERING. doi: 10.1016/j.apsb.2021.12.012 |
[13] | Hong Fang, Fan Zhang, Chongyang Zhang, Dan Wang, Shuangqian Shen, Feng He, Hui Tao, Ruyi Wang, Min Wang, Debao Wang, Xionglun Liu, Jie Luo, Guo-Liang Wang, Yuese Ning. Function of hydroxycinnamoyl transferases for the biosynthesis of phenolamides in rice resistance to Magnaporthe oryzae[J]. JOURNAL OF MECHANICAL ENGINEERING. doi: 10.1016/j.jgg.2022.02.008 |
[14] | Qiuhong Wu, Yongxing Chen, Beibei Li, Jing Li, Panpan Zhang, Jingzhong Xie, Huaizhi Zhang, Guanghao Guo, Ping Lu, Miaomiao Li, Keyu Zhu, Wenling Li, Tzion Fahima, Eviatar Nevo, Hongjie Li, Lingli Dong, Zhiyong Liu. Functional characterization of powdery mildew resistance gene MlIW172, a new Pm60 allele and its allelic variation in wild emmer wheat[J]. JOURNAL OF MECHANICAL ENGINEERING. doi: 10.1016/j.jgg.2022.01.010 |
[15] | Ying Wu, Congying Pu, Yixian Fu, Guoqiang Dong, Min Huang, Chunquan Sheng. NAMPT-targeting PROTAC promotes antitumor immunity via suppressing myeloid-derived suppressor cell expansion[J]. JOURNAL OF MECHANICAL ENGINEERING. doi: 10.1016/j.apsb.2021.12.017 |
[16] | Yan Zhao, Xiaobo Zhu, Xuewei Chen, Jian-Min Zhou. From plant immunity to crop disease resistance[J]. JOURNAL OF MECHANICAL ENGINEERING. doi: 10.1016/j.jgg.2022.06.003 |
[17] | Zhang Hao-Jie, Zhang Ru-Fei, Fu Li-Cheng, Gu Yi-Lun, Zhi Guo-Xiang, Dong Jin-Ou, Zhao Xue-Qin, Ning Fan-Long. (La1–xSrx)(Zn1–xMnx)SbO: A novel 1111-type diluted magnetic semiconductor[J]. JOURNAL OF MECHANICAL ENGINEERING, 2021, 70(10): 107501. doi: 10.7498/aps.70.20201966 |
[18] | Zhong Guorong,Li Xuegang,Qu Baoxiao, et al. A general regression neural network approach to reconstruct global 1°×1° resolution sea surface pCO2[J]. Haiyang Xuebao,2020, 42(10):70–79. doi: 10.3969/j.issn.0253-4193.2020.10.007. |
[19] | Yutong QIAN, Jian SHEN, Jiazhen ZHANG, Tanqin HE, Liya HUANG. Classification of emotional brain networks based on weighted K-order propagation number[J]. JOURNAL OF MECHANICAL ENGINEERING, 2020, 37(3): 412-418. doi: 10.7507/1001-5515.201905039 |
[20] | Liu Chenlin,Wang Xiuliang,Lin Xuezheng. De nova transcriptome analysis and mining extreme light environments acclimation responding genes of Antarctic seaweed Iridaea cordata (Gigartinales, Rhodophyta) and Curdiea racovitzae (Gracilariaceae, Rhodophyta)[J]. Haiyang Xuebao,2020, 42(10):110–120. doi: 10.3969/j.issn.0253-4193.2020.10.011. |