Issue 10
May. 2023
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YANG Chen, KE Yue, HUANG Sixing, et al. Comparative Study on Bacterial Diversity of Zha-Chili in Different Regions[J]. Science and Technology of Food Industry, 2023, 44(10): 145−150. (in Chinese with English abstract). doi: 10.13386/j.issn1002-0306.2022080269
Citation: YANG Chen, KE Yue, HUANG Sixing, et al. Comparative Study on Bacterial Diversity of Zha-Chili in Different Regions[J]. Science and Technology of Food Industry, 2023, 44(10): 145−150. (in Chinese with English abstract). doi: 10.13386/j.issn1002-0306.2022080269

Comparative Study on Bacterial Diversity of Zha-Chili in Different Regions

doi: 10.13386/j.issn1002-0306.2022080269
  • Received Date: 30 Aug 2022
  • Issue Publish Date: 15 May 2023
  • In this study, Illumina MiSeq sequencing technology was used to analyze the bacterial community structure of Zha-Chili from Xingshan and Baojing. The α-diversity analysis showed that the community diversity and abundance of Zha-Chili in Xingshan were significantly lower than those in Baojing (P<0.05). Lactobacillus belonging to the Firmicutes was the main bacteria in the two places, the abundance of which was 50.24% in Xingshan and 88.26% in Baojing. β diversity analysis found that the bacterial community structure of Xingshan and Baojing Zha-Chili was significantly different on the whole (P<0.01) and 11 biomarkers were identified, among which Lactobacillus and Chishuiella were the most influential ones. Phenotypes prediction showed that bacterial groups of Zha-Chili of Xingshan were significantly expressed in movable elements, biofilm formation, gram negative, pathogenic potential and tolerance to oxidative stress, while the bacteria in Baojing Zha-Chili were significantly expressed in gram-positive.

     

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  • [1]
    YÉPEZ A, LUZ C, MECA G, et al. Biopreservation potential of lactic acid bacteria from Andean fermented food of vegetal origin[J]. Food Control,2017,78(3):393−400.
    [2]
    王玉荣, 沈馨, 董蕴, 等. 鲊广椒细菌多样性评价及其对风味的影响[J]. 食品与机械,2018,34(4):25−30. [WANG Y, SHEN X, DONG Y, et al. Characterization of bacterial microflora and their functions on flavor quality[J]. Food & Machinery,2018,34(4):25−30. doi: 10.13652/j.issn.1003-5788.2018.04.005
    [3]
    崔小利, 王薇, 阚建全. 鲊辣椒纯种发酵的菌株优选[J]. 食品科学,2014,35(21):149−153. [CUI X, WANG W, KAN J. Screening strains for use in pure culture fermentation for the production of Zha-Chili, a traditional chinese fermented hot pepper product[J]. Food Science,2014,35(21):149−153. doi: 10.7506/spkx1002-6630-201421029
    [4]
    李娜, 张苗苗, 舒娜, 等. 咸丰和当阳地区鲊广椒细菌群落结构差异性研究[J]. 中国酿造,2020,39(10):48−53. [LI N, ZHANG M, SHU N, et al. Difference of bacterial community structure of zha-chili in xianfeng and dangyang region[J]. China Brewing,2020,39(10):48−53. doi: 10.11882/j.issn.0254-5071.2020.10.010
    [5]
    韦明明. 番茄酸汤发酵过程分析及混菌发酵工艺研究[D]. 南京: 南京农业大学, 2016.

    WEI M. Analysis of tomato sour soup during fermentation process and study on the mixed culture fermentation technology for tomato sour soup[D]. Nanjing: Nanjing Agricultural University, 2016.
    [6]
    荆雪娇. 传统发酵蔬菜微生物群落结构分析[D]. 太原: 山西大学, 2016.

    JING X. Microbial community structure analysis of traditional fermented vegetables[D]. Taiyuan: Shanxi University, 2016.
    [7]
    SUN X, LYU G, LUAN Y, et al. Analyses of microbial community of naturally homemade soybean pastes in Liaoning Province of China by Illumina MiSeq Sequencing[J]. Food Research International,2018,111(9):50−57.
    [8]
    XIE M, AN F, WU J, et al. Meta-omics reveal microbial assortments and key enzymes in bean sauce mash, a traditional fermented soybean product[J]. Journal of the Science of Food and Agriculture,2019,99(14):6522−6534. doi: 10.1002/jsfa.9932
    [9]
    LEMBELLA B A E, LEBONGUY A A, GOMATCHIMBAKALA J, et al. Bacterial community diversity of fermented pepper in brazzaville revealed by Illumina MiSeq of 16S rRNA gene[J]. Food And Nutrition Sciences,2021,12(1):37−53. doi: 10.4236/fns.2021.121004
    [10]
    DWA B, GONG C, YAO T, et al. Effects of temperature on paocai bacterial succession revealed by culture-dependent and culture-independent methods- ScienceDirect[J]. International Journal of Food Microbiology,2020,317(4):1−31.
    [11]
    AGNIESZKA, PIOTROWSKA-CYPLIK, KAMILA, et al. Characterization of specific spoilage organisms (SSOs) in vacuum-packed ham by culture-plating techniques and MiSeq next-generation sequencing technologies[J]. Journal of the Science of Food and Agriculture,2016,97(2):659−668.
    [12]
    郭壮, 葛东颖, 尚雪娇, 等. 退化和正常窖泥微生物多样性的比较分析[J]. 食品工业科技,2018,39(22):93−98. [GUO Z, GE D, SHANG X, et al. Comparative analysis on the diversity of bacterial microflora in degenerated and normal pit mud[J]. Science and Technology of Food Industry,2018,39(22):93−98. doi: 10.13386/j.issn1002-0306.2018.22.018
    [13]
    CAPORASO J G, KUCZYNSKI J, STOMBAUGH J, et al. QIIME allows analysis of high-throughput community sequencing data[J]. Nature Methods,2010,7(4):335−336.
    [14]
    KNIGHT R. PyNAST: A flexible tool for aligning sequences to a template alignment[J]. Bioinformatics,2010,26(2):266−267. doi: 10.1093/bioinformatics/btp636
    [15]
    GOLOB J L, MARGOLIS E, HOFFMAN N G, et al. Evaluating the accuracy of amplicon-based microbiome computational pipelines on simulated human gut microbial communities[J]. Bmc Bioinformatics,2017,18(1):283. doi: 10.1186/s12859-017-1690-0
    [16]
    KNIGHT R. UCHIME improves sensitivity and speed of chimera detection[J]. Bioinformatics,2011,27(16):2194−2200. doi: 10.1093/bioinformatics/btr381
    [17]
    DESANTIS T Z, HUGENHOLTZ P, LARSEN N, et al. Greengenes, a chimera-checked 16s rRNA gene database and workbench compatible with ARB[J]. Applied & Environmental Microbiology,2006,72(7):5069−5072.
    [18]
    QUAST C, PRUESSE E, YILMAZ P, et al. The SILVA ribosomal RNA gene database project: Improved data processing and web-based tools[J]. Nucleic Acids Research,2012,41(D1):590−596. doi: 10.1093/nar/gks1219
    [19]
    COLE J R, WANG Q, CARDENAS E, et al. The ribosomal database project: Improved alignments and new tools for rRNA analysis[J]. Nucleic Acids Research,2009,37(suppl_1):141−145.
    [20]
    LOZUPONE C, KNIGHT R. UniFrac: A new phylogenetic method for comparing microbial communities[J]. Applied and Environmental Microbiology,2005,71(12):8228−8235. doi: 10.1128/AEM.71.12.8228-8235.2005
    [21]
    WARD T, LARSON J, MEULEMANS J, et al. BugBase predicts organism level microbiome phenotypes[J]. BioRxiv, 2017.
    [22]
    WANG H L, HOPFER H, COCKBURN D W, et al. Characterization of microbial dynamics and volatile metabolome changes during fermentation of Chambourcin hybrid grapes from two Pennsylvania regions[J]. Frontiers in Microbiology,2021,11(1):3454−3475.
    [23]
    CHEN H, ZHANG Q, WAN H, et al. Effect of total inoculum size containing Lactobacillus acidophilus or Lactobacillus casei on fermentation of goat milk[J]. Advance Journal of Food Science and Technology,2015,7(3):183−186. doi: 10.19026/ajfst.7.1290
    [24]
    赵跃, 李春生, 王悦齐, 等. 罗非鱼鱼糜自然发酵过程中微生物群落结构对其品质形成的影响[J]. 食品科学,2021,42(18):119−126. [ZHAO Y, LI C, WANG Y, et al. Effect of microbial community structure on quality formation of naturally fermented tilapia surimi[J]. Food Science,2021,42(18):119−126. doi: 10.7506/spkx1002-6630-20200915-194
    [25]
    BORGONOVI T F, CASAROTTI S N, PENNA A L B. Lacticaseibacillus casei SJRP38 and buriti pulp increased bioactive compounds and probiotic potential of fermented milk[J]. LWT,2021,143:111124. doi: 10.1016/j.lwt.2021.111124
    [26]
    BAS T, DOUWE M. Systems biology of lactic acid bacteria: For food and thought[J]. Current Opinion in Systems Biology,2017,6(12):7−13.
    [27]
    王航. 草鱼贮藏过程中品质变化规律及特定腐败菌的研究[D]. 北京: 中国农业大学, 2016.

    WANG H. Quality changes and the specific spoilage organisms of grass carp (Ctenopharyngodon idellus) fillets during storage[D]. Beijing: China Agricultural University, 2016.
    [28]
    RAWAT S. Food spoilage: Microorganisms and their prevention[J]. Asian Journal of Plant Science and Research,2015,5(4):47−56.
    [29]
    SEGATA N, IZARD J, WALDRON L, et al. Metagenomic biomarker discovery and explanation[J]. Genome Biology,2011,12(6):R60. doi: 10.1186/gb-2011-12-6-r60
    [30]
    孙娜, 张雅婷, 于寒松, 等. 发酵型青腐乳菌群结构与风味物质及其相关性分析[J]. 食品科学,2020,41(22):177−183. [SUN N, ZHANG Y, YU H, et al. Microflora structure and flavor components and correlation between them in fermented stinky tofu[J]. Food Science,2020,41(22):177−183. doi: 10.7506/spkx1002-6630-20190929-360
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